FastQCFastQC Report
Thu 25 Jul 2024
EGAF00008487486

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008487486
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences95733058
Total Bases7.6 Gbp
Sequences flagged as poor quality0
Sequence length80
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCCGGGAC3346470.3495626348841797No Hit
GTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCCGGGACC2726590.28481175227892547No Hit
CGGAAACCTTGTTACGACTTTTACTTCCTCTAGATAGTCAAGTTCGACCG2063570.2155545893039372No Hit
GCTGCAGGTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGC1422460.14858608193629416No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)