FastQCFastQC Report
Thu 25 Jul 2024
EGAF00008487495

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008487495
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences80675553
Total Bases6.4 Gbp
Sequences flagged as poor quality0
Sequence length80
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCCGGGAC1960560.24301785697087197No Hit
GCTGCAGGTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGC1097060.13598419337763945No Hit
GTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCCGGGACC1031240.1278255880068154No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1019030.12631211836874548No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)