FastQCFastQC Report
Thu 25 Jul 2024
EGAF00008487499

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008487499
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences108829440
Total Bases8.3 Gbp
Sequences flagged as poor quality0
Sequence length75-79
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG2607250.23957212313138798No Hit
GGTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCCGGGAC2603680.2392440868941345No Hit
GTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCCGGGACC1642940.15096466544346823No Hit
GCTGCAGGTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGC1578250.14502050180539383No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)