FastQCFastQC Report
Thu 25 Jul 2024
EGAF00008487546

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008487546
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences87706948
Total Bases6.9 Gbp
Sequences flagged as poor quality0
Sequence length79
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG2244120.255865704048897No Hit
GGTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCCGGGAC1699680.19379080434995868No Hit
GTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGCCGGGACC1154150.1315916271536435No Hit
GCTGCAGGTCGACCCGTGCGGAGGAGCGAGGAGGAAGGACGCGCGAGGGC950610.10838479979944121No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)