FastQCFastQC Report
Wed 31 Jul 2024
EGAF00008487686

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008487686
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences117913840
Total Bases17.8 Gbp
Sequences flagged as poor quality0
Sequence length151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGAATTCGTATCTCGTAT3300940.27994508532670975TruSeq Adapter, Index 7 (97% over 35bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1508030.12789253577018608No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)