FastQCFastQC Report
Tue 20 Aug 2024
EGAF00008502015

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008502015
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50684405
Total Bases8.9 Gbp
Sequences flagged as poor quality0
Sequence length176
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7877921.554308470228663No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2274770.44881063514507075No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1072200.21154435965066573No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)