FastQCFastQC Report
Tue 20 Aug 2024
EGAF00008502039

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008502039
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences64197206
Total Bases11.2 Gbp
Sequences flagged as poor quality0
Sequence length176
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5316910.8282151718565447No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4732570.7371925189392199No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2045230.3185855160113978No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)