FastQCFastQC Report
Tue 20 Aug 2024
EGAF00008502071

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008502071
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences72701249
Total Bases12.7 Gbp
Sequences flagged as poor quality0
Sequence length176
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5694110.7832203818121475No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5094880.7007967634778874No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1342490.18465845064092365No Hit
GGGTAAATGAGTGCGACGGCCGGCAAGCCCCCGCTCCCCGGGCTCTCGCG1248220.17169168579208316No Hit
CCTTTTTCCACAGGGGACCTACCCCTATTGCGGTCCTCCAGCTCATCTTT1008400.13870463215838286No Hit
GTTAGAGGGAGAAGTGCCCCCACCTGCTCCTCAGTTCCAGCCTGACCCCC896140.12326335686474932No Hit
GCGACGGCCGGCAAGCCCCCGCTCCCCGGGCTCTCGCGGTCGCACGAGGA732960.10081807535383608No Hit
GGTAAATGAGTGCGACGGCCGGCAAGCCCCCGCTCCCCGGGCTCTCGCGG731000.10054847888514268No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)