FastQCFastQC Report
Tue 20 Aug 2024
EGAF00008502078

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008502078
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences74097315
Total Bases13 Gbp
Sequences flagged as poor quality0
Sequence length176
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6237220.8417605955087577No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3401080.45900178704181116No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2430370.3279970401086733No Hit
GGGTAAATGAGTGCGACGGCCGGCAAGCCCCCGCTCCCCGGGCTCTCGCG1257950.16976998424301878No Hit
CCAGCTCATCTTTCACCTCACCCCCCTCCTCCTCCTTGGCTTTAATTATG1074610.14502684746404104No Hit
GTTAGAGGGAGAAGTGCCCCCACCTGCTCCTCAGTTCCAGCCTGACCCCC947310.12784673776640892No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)