FastQCFastQC Report
Tue 20 Aug 2024
EGAF00008502116

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008502116
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences96257244
Total Bases16.9 Gbp
Sequences flagged as poor quality0
Sequence length176
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9384960.9749873993899097No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA4331050.4499453568398447No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2248100.2335512535555246No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)