FastQCFastQC Report
Tue 20 Aug 2024
EGAF00008502185

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008502185
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences63790782
Total Bases11.2 Gbp
Sequences flagged as poor quality0
Sequence length176
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT6778531.0626190473727066No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4685300.7344791603275846No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1272570.1994912054848301No Hit
ATCGAACCCCCCAAAGCTGGTTTCAAGCCAACCCCATGGCCTCCATGACT705980.11067116248864922No Hit
GGGTAAATGAGTGCGACGGCCGGCAAGCCCCCGCTCCCCGGGCTCTCGCG701810.11001746302467337No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)