FastQCFastQC Report
Tue 20 Aug 2024
EGAF00008502582

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008502582
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences90930381
Total Bases16 Gbp
Sequences flagged as poor quality0
Sequence length176
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12901941.4188811108137773No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5776880.635308016580289No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1693810.18627547596000946No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)