FastQCFastQC Report
Tue 20 Aug 2024
EGAF00008502585

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008502585
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences46576996
Total Bases8.1 Gbp
Sequences flagged as poor quality0
Sequence length176
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5282011.1340383566170735No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3910920.8396677192320432No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA709250.1522747409472264No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)