FastQCFastQC Report
Tue 20 Aug 2024
EGAF00008502647

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008502647
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences71996602
Total Bases12.6 Gbp
Sequences flagged as poor quality0
Sequence length176
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10166721.412111088242748No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6091550.8460885417897918No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA932540.12952555733116405No Hit
CCTTTTTCCACAGGGGACCTACCCCTATTGCGGTCCTCCAGCTCATCTTT844420.11728609080745227No Hit
GGGTAAATGAGTGCGACGGCCGGCAAGCCCCCGCTCCCCGGGCTCTCGCG825070.11459846396639664No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)