FastQCFastQC Report
Tue 20 Aug 2024
EGAF00008502731

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008502731
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences68689720
Total Bases12 Gbp
Sequences flagged as poor quality0
Sequence length176
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG12332551.7953996609681915No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3735420.54381063134338No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3276230.4769607446354418No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)