FastQCFastQC Report
Tue 20 Aug 2024
EGAF00008502959

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008502959
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26686566
Total Bases2.6 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG537770.20151337568123226No Hit
CCATGATCACGAAGGTGGTTTTCCCAGGGCGAGGCTTATCCATTGCACTC267120.10009530637999658No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)