FastQCFastQC Report
Tue 20 Aug 2024
EGAF00008502963

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008502963
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26646194
Total Bases2.6 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCCACTACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCG370950.13921312739823183No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT347700.13048767865309396No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)