FastQCFastQC Report
Tue 20 Aug 2024
EGAF00008503121

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008503121
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences33008906
Total Bases3.3 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA889550.26948787699901355No Hit
GGCGTACGGAAGACCCGCTCCCCGGCGCCGCTCGTGGGGGGCCCAAGTCC582780.17655235226517352No Hit
CCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGT548530.16617636464534752No Hit
CTCGGATCGGCCCCGCCGGGGTCGGCCCACGGCCCTGGCGGAGCGCTGAG507200.1536555013365181No Hit
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT457600.13862925357174818No Hit
CCCCAGAGTACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCA424730.1286713349421517No Hit
CCCACTTCGTTTTCCACTTAGCCAATCTTTGGGACCTTAGCTGGCGGTCT372700.11290892221632551No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT352820.10688630516867176No Hit
CCCCACTACCACAAATTATGCAGTCGAGTTTCCCACATTTGGGGAAATCG332080.10060315237348369No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)