FastQCFastQC Report
Tue 20 Aug 2024
EGAF00008503159

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008503159
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences111051382
Total Bases3.4 Gbp
Sequences flagged as poor quality0
Sequence length31
%GC43

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGAAGAGCACACGTCTGAACTCCAGTCACC1431070.1288655732352795TruSeq Adapter, Index 2 (100% over 31bp)

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)