FastQCFastQC Report
Tue 20 Aug 2024
EGAF00008503166

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008503166
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67055098
Total Bases11.8 Gbp
Sequences flagged as poor quality0
Sequence length176
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8644851.289215922106325No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5381020.8024773895640269No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2208230.3293157516524694No Hit
AATCGAACCCCCCAAAGCTGGTTTCAAGCCAACCCCATGGCCTCCATGAC775730.1156854621254897No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)