FastQCFastQC Report
Tue 20 Aug 2024
EGAF00008503308

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008503308
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52804367
Total Bases9.2 Gbp
Sequences flagged as poor quality0
Sequence length176
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10423431.9739712058284877No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1894380.3587544189290253No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA865500.1639068980790926No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)