FastQCFastQC Report
Tue 20 Aug 2024
EGAF00008503637

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008503637
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29523342
Total Bases2.9 Gbp
Sequences flagged as poor quality0
Sequence length101
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG581120.1968340847049091No Hit
CCATGATCACGAAGGTGGTTTTCCCAGGGCGAGGCTTATCCATTGCACTC346810.11746976341635035No Hit
GTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGG318270.10780283614233103No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)