FastQCFastQC Report
Tue 20 Aug 2024
EGAF00008503822

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008503822
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences64494841
Total Bases11.3 Gbp
Sequences flagged as poor quality0
Sequence length176
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT12749061.9767565594897736No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG3891130.6033242255764303No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1426570.22119133528835272No Hit
GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1255650.19468999078546453No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1162270.1802113133358992No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)