FastQCFastQC Report
Tue 20 Aug 2024
EGAF00008503849

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008503849
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences64457322
Total Bases11.3 Gbp
Sequences flagged as poor quality0
Sequence length176
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT7522531.1670559319855083No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5688680.8825498521331681No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1279590.1985174003971186No Hit
GGGTAAATGAGTGCGACGGCCGGCAAGCCCCCGCTCCCCGGGCTCTCGCG1214310.18838976896992402No Hit
CCAGCTCATCTTTCACCTCACCCCCCTCCTCCTCCTTGGCTTTAATTATG1129690.17526170261929283No Hit
CCTTTTTCCACAGGGGACCTACCCCTATTGCGGTCCTCCAGCTCATCTTT1057860.16411789493829732No Hit
GTTAGAGGGAGAAGTGCCCCCACCTGCTCCTCAGTTCCAGCCTGACCCCC731440.11347663497406858No Hit
CTTTTTCCACAGGGGACCTACCCCTATTGCGGTCCTCCAGCTCATCTTTC652060.10116150962647813No Hit
GGTAAATGAGTGCGACGGCCGGCAAGCCCCCGCTCCCCGGGCTCTCGCGG644940.1000569027673846No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)