FastQCFastQC Report
Tue 20 Aug 2024
EGAF00008503874

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008503874
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences80308369
Total Bases14.1 Gbp
Sequences flagged as poor quality0
Sequence length176
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9953731.2394386941166742No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3291610.4098713547525788No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1405700.17503779711925166No Hit
GGGTAAATGAGTGCGACGGCCGGCAAGCCCCCGCTCCCCGGGCTCTCGCG877540.10927130147544148No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)