FastQCFastQC Report
Tue 20 Aug 2024
EGAF00008503934

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008503934
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65523905
Total Bases11.5 Gbp
Sequences flagged as poor quality0
Sequence length176
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5676910.8663876183814136No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2972780.4536939610055292No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1348850.20585616806568532No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)