FastQCFastQC Report
Tue 20 Aug 2024
EGAF00008503938

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008503938
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47215005
Total Bases8.3 Gbp
Sequences flagged as poor quality0
Sequence length176
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8069621.7091219200336842No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3339450.7072857452837292No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3331610.7056252562082753No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)