FastQCFastQC Report
Tue 20 Aug 2024
EGAF00008503970

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008503970
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50183047
Total Bases8.8 Gbp
Sequences flagged as poor quality0
Sequence length176
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7843721.5630218707126335No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2320120.46233143236599406No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1327400.2645116387611936No Hit
GGTGCGACGGCCGGCAAGCCCCCGCTCCCCGGGCTCTCGCGGTCGCACGA600070.11957623856518718No Hit
GGGTAAATGAGTGCGACGGCCGGCAAGCCCCCGCTCCCCGGGCTCTCGCG556870.1109677537117266No Hit
GGTAAATGAGTGCGACGGCCGGCAAGCCCCCGCTCCCCGGGCTCTCGCGG540370.10767979074686317No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)