FastQCFastQC Report
Tue 20 Aug 2024
EGAF00008504102

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008504102
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences101490862
Total Bases17.8 Gbp
Sequences flagged as poor quality0
Sequence length176
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT18470201.8198879816391746No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8142550.8022939050414214No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2453200.2417163428959742No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1658300.16339402063606476No Hit
GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1550210.15274380071774343No Hit
ATCGAACCCCCCAAAGCTGGTTTCAAGCCAACCCCATGGCCTCCATGACT1020720.10057260130473618No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)