FastQCFastQC Report
Tue 20 Aug 2024
EGAF00008504277

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008504277
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences53446074
Total Bases9.4 Gbp
Sequences flagged as poor quality0
Sequence length176
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3052720.5711775948220257No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG2758950.5162119110937877No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA539510.10094473917766159No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)