FastQCFastQC Report
Tue 20 Aug 2024
EGAF00008504308

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008504308
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65120551
Total Bases11.4 Gbp
Sequences flagged as poor quality0
Sequence length176
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT8341031.2808598625033132No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6935341.0650002024706455No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2123580.3260998206234465No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT823680.12648541625515422No Hit
GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT823240.12641784925929142No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)