FastQCFastQC Report
Tue 20 Aug 2024
EGAF00008504311

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008504311
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences105176986
Total Bases18.5 Gbp
Sequences flagged as poor quality0
Sequence length176
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT84589978.042631113236123No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4424090.4206328939678876No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3120810.2967198546647838No Hit
GTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2222610.211320944298594No Hit
ATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1185790.11274234460379004No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)