FastQCFastQC Report
Tue 20 Aug 2024
EGAF00008504391

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008504391
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67248984
Total Bases11.8 Gbp
Sequences flagged as poor quality0
Sequence length176
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG8517731.2665960871617035No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT7373671.0964730708794053No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1219790.18138415295612495No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)