FastQCFastQC Report
Tue 20 Aug 2024
EGAF00008504417

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008504417
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58989221
Total Bases10.3 Gbp
Sequences flagged as poor quality0
Sequence length176
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9148031.5507968820269724No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3910560.6629278932162878No Hit
GGTAAATGAGTGCGACGGCCGGCAAGCCCCCGCTCCCCGGGCTCTCGCGG730840.12389382121184478No Hit
GCGACGGCCGGCAAGCCCCCGCTCCCCGGGCTCTCGCGGTCGCACGAGGA729910.12373616529026549No Hit
GGGTAAATGAGTGCGACGGCCGGCAAGCCCCCGCTCCCCGGGCTCTCGCG656020.11121014803704563No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)