FastQCFastQC Report
Tue 20 Aug 2024
EGAF00008504423

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008504423
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences58376169
Total Bases10.2 Gbp
Sequences flagged as poor quality0
Sequence length176
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11510671.97180976367257No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5277210.9040007404391337No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA4107950.7037032526063847No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)