FastQCFastQC Report
Tue 20 Aug 2024
EGAF00008504467

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008504467
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36911977
Total Bases6.4 Gbp
Sequences flagged as poor quality0
Sequence length176
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5312561.4392510051683225No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2853400.7730282233324972No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1100440.29812545667765233No Hit
GGTGCGACGGCCGGCAAGCCCCCGCTCCCCGGGCTCTCGCGGTCGCACGA578480.15671877992338368No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)