FastQCFastQC Report
Tue 20 Aug 2024
EGAF00008504515

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008504515
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences61983859
Total Bases10.9 Gbp
Sequences flagged as poor quality0
Sequence length176
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6310171.0180343885978445No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2494630.4024644544961294No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2035200.3283435450509785No Hit
GGGTAAATGAGTGCGACGGCCGGCAAGCCCCCGCTCCCCGGGCTCTCGCG941960.1519685955661457No Hit
GTTAGAGGGAGAAGTGCCCCCACCTGCTCCTCAGTTCCAGCCTGACCCCC729760.11773387649194283No Hit
CCTTTTTCCACAGGGGACCTACCCCTATTGCGGTCCTCCAGCTCATCTTT717850.1158124085175142No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)