FastQCFastQC Report
Tue 20 Aug 2024
EGAF00008504543

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008504543
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65653672
Total Bases11.5 Gbp
Sequences flagged as poor quality0
Sequence length176
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7704691.173535274614952No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA5762650.8777346071366732No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5621740.8562719842996749No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)