FastQCFastQC Report
Tue 20 Aug 2024
EGAF00008504547

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008504547
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49878830
Total Bases8.7 Gbp
Sequences flagged as poor quality0
Sequence length176
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4179060.837842427338412No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3375080.6766558076843422No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA2028500.4066855617904429No Hit
GGGTAAATGAGTGCGACGGCCGGCAAGCCCCCGCTCCCCGGGCTCTCGCG1387150.2781039571297081No Hit
GGTGCGACGGCCGGCAAGCCCCCGCTCCCCGGGCTCTCGCGGTCGCACGA1013780.20324855254223087No Hit
GGTAAATGAGTGCGACGGCCGGCAAGCCCCCGCTCCCCGGGCTCTCGCGG816850.16376687263915374No Hit
TAGAGCTGCAGGATCCCAGGGGAGGGGTCTCTCCTCCCACCCCAAGGCAT757660.1519001147380562No Hit
GGGGTAAATGAGTGCGACGGCCGGCAAGCCCCCGCTCCCCGGGCTCTCGC726980.14574920863219926No Hit
GGTCCGACACAGCTGGCACCTGCTACTGACCCTGCTGGCCTGCCCACAGG713540.1430546787083819No Hit
GTGCGACGGCCGGCAAGCCCCCGCTCCCCGGGCTCTCGCGGTCGCACGAG646460.12960608739218624No Hit
ATGAGTGCGACGGCCGGCAAGCCCCCGCTCCCCGGGCTCTCGCGGTCGCA587910.11786764043984191No Hit
GCGACGGCCGGCAAGCCCCCGCTCCCCGGGCTCTCGCGGTCGCACGAGGA540290.10832050390917349No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)