FastQCFastQC Report
Tue 20 Aug 2024
EGAF00008504607

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008504607
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences60482696
Total Bases10.6 Gbp
Sequences flagged as poor quality0
Sequence length176
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5214490.8621457614918488No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4154190.6868394226342026No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA769900.1272926061364725No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)