FastQCFastQC Report
Tue 20 Aug 2024
EGAF00008504616

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008504616
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences47121615
Total Bases8.2 Gbp
Sequences flagged as poor quality0
Sequence length176
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6485611.376355627879053No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA4480570.9508523848344332No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2068450.43895991255817524No Hit
GGTGCGACGGCCGGCAAGCCCCCGCTCCCCGGGCTCTCGCGGTCGCACGA545640.11579399390279813No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)