FastQCFastQC Report
Tue 20 Aug 2024
EGAF00008504634

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008504634
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences50532450
Total Bases8.8 Gbp
Sequences flagged as poor quality0
Sequence length176
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG7217921.428373253226392No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1191920.2358721969744194No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA671910.13296604459114886No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)