FastQCFastQC Report
Tue 20 Aug 2024
EGAF00008504657

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008504657
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56668449
Total Bases9.9 Gbp
Sequences flagged as poor quality0
Sequence length176
%GC43

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5623320.9923193768723051No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4633120.8175836963527977No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)