FastQCFastQC Report
Tue 20 Aug 2024
EGAF00008504939

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008504939
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences96470092
Total Bases16.9 Gbp
Sequences flagged as poor quality0
Sequence length176
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10957571.1358515134410778No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT8166450.8465266105478576No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA3186530.33031273568185254No Hit
ATCGAACCCCCCAAAGCTGGTTTCAAGCCAACCCCATGGCCTCCATGACT1272830.13194037381036186No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)