FastQCFastQC Report
Tue 20 Aug 2024
EGAF00008504941

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008504941
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences56316428
Total Bases9.9 Gbp
Sequences flagged as poor quality0
Sequence length176
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9721081.7261535124351282No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2352200.41767563809267166No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1644380.29198939961177933No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)