FastQCFastQC Report
Thu 19 Sep 2024
EGAF00008551324

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008551324
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences174075
Total Bases6.6 Mbp
Sequences flagged as poor quality0
Sequence length38
%GC39

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTT74774.295275025132845No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTT57263.289386758581071No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT29701.7061611374407581No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTT24741.4212264828378574No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT11830.6795921298290967No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAA9680.5560821484992101No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTT8680.4986356455550768No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT8110.46589113887692085No Hit
GTACATGGGTGGTATCAACGCAGAAAAAAAAAAAAAAA4750.2728708889846331No Hit
ACGCAGAGTACATGGGAAGCAGTGGTATCAAAAAAAAA4350.24989228780697975No Hit
CAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT3700.21255206089329312No Hit
GTACATGGGGTGGTATCAACGCAGAAAAAAAAAAAAAA3650.20967973574608645No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3560.20450955048111447No Hit
TCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTT3330.1912968548039638No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAAA3200.18382880942122648No Hit
AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT3120.17923308918569583No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAAAA2780.1597012781846905No Hit
GAAGCAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAA2740.15740341806692518No Hit
CCCCTATACCTTCTGCATAATGAATTAACTAGAAATAA2330.13385035185983055No Hit
GTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAA2220.12753123653597587No Hit
CAGTGGTATCAAAAAAAAAAAAAAAAAAAAAAAAAAAA2040.11719086600603189No Hit
ACGCAGAGTACATGGGTGGTATCAACGCAGAAAAAAAA2040.11719086600603189No Hit
ACGCAGAGTACATGGGGTGGTATCAACGCAGAAAAAAA2030.11661640097659054No Hit
AGCATGTACTGCTCGGAGGTTGGGTTCTGCTCCGAGGT1990.11431854085882522No Hit
GTATCAACGCAGAGTACATGGGTGGTATCAACGCAGAA1890.10857389056441188No Hit
GTACATGGGTGGTATCAACGCAAAAAAAAAAAAAAAAA1840.10570156541720524No Hit
ATATAGTACCGCAAGGGAAAGATGAAAAATTATAACCA1840.10570156541720524No Hit
GTATCAACGCAGAGTACATGGGGTGGTATCAACGCAGA1790.10282924026999857No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)