FastQCFastQC Report
Thu 19 Sep 2024
EGAF00008551650

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008551650
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2456811
Total Bases93.3 Mbp
Sequences flagged as poor quality0
Sequence length38
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTT790013.2155912685184167No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTT493672.0093934779679836No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT285571.1623604746152634No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTT250161.0182305435786472No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT126370.5143659809403328No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTT111330.45314841068360573No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT91820.37373652267105606No Hit
GTACATGGGGTGGTATCAACGCAAAAAAAAAAAAAAAA73020.2972145598501472No Hit
GTACATGGGCAGTGGTATCAACGCAAAAAAAAAAAAAA60510.24629489203687216No Hit
GTACATGGGTGGTATCAACGCAGAAAAAAAAAAAAAAA55670.22659455692765948No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT50520.205632423495336No Hit
GTATCAACGCAGAGTACATGGGGTGGTATCAACGCAAA49500.20148069998058457No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAA46870.19077576582No Hit
CAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT44680.18186177121479835No Hit
AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT39140.1593122140856582No Hit
GTACATGGGGTGGTATCAACGCAGAAAAAAAAAAAAAA37860.15410220810636227No Hit
TATCAACGCAGAGTACATGGGGTGGTATCAACGCAAAA37060.15084595436930232No Hit
GTACATGGGTGGTATCAACGCAAAAAAAAAAAAAAAAA36350.1479560291776616No Hit
TCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTT35940.1462871991374184No Hit
GTATCAACGCAGAGTACATGGGTGGTATCAACGCAGAA35250.14347868028920416No Hit
GTATCAACGCAGAGTACATGGGCAGTGGTATCAACGCA34450.14022242655214423No Hit
GTATCAACGCAGAGTACATGGGGTGGTATCAACGCAGA32470.13216319855292083No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAAA31850.12963960190669938No Hit
ACGCAGAGTACATGGGGTGGTATCAACGCAAAAAAAAA30530.12426678324055046No Hit
GTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAA28940.11779497893814381No Hit
TATCAACGCAGAGTACATGGGTGGTATCAACGCAGAAA26840.10924731287836142No Hit
ACGCAGAGTACATGGGCAGTGGTATCAACGCAAAAAAA25060.10200214831340303No Hit
TATCAACGCAGAGTACATGGGCAGTGGTATCAACGCAA24730.10065894364686578No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)