FastQCFastQC Report
Thu 19 Sep 2024
EGAF00008552071

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008552071
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences944208
Total Bases35.8 Mbp
Sequences flagged as poor quality0
Sequence length38
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTT211602.241031637096911No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTT148711.5749707691525596No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTT54610.5783683256231678No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT48870.5175766356565503No Hit
GTTCTATTGTGAGCGCTAAAAAAAAAAAAAAAAAAAAA24840.2630776269635504No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT22830.2417899445884805No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTT21440.22706861200074557No Hit
GTTCTATTGTGAGCGATAAAAAAAAAAAAAAAAAAAAA15240.16140511412739567No Hit
GTATCAACGCAGAGTACATGGGCAGACGTGTGCTCTTC13260.14043515835493875No Hit
GTTCTATTGTGAGCGCTGAAAAAAAAAAAAAAAAAAAA12920.13683425685865827No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCAC12210.1293147272634843No Hit
GTATCAACGCAGAGTACATGGGGAATAATTGCAATCCC10920.11565248335112602No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10870.11512293901343772No Hit
GTTCTATTGTGAGCGTTAAAAAAAAAAAAAAAAAAAAA9530.10093115076339113No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)