FastQCFastQC Report
Thu 19 Sep 2024
EGAF00008553585

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008553585
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences219964
Total Bases8.3 Mbp
Sequences flagged as poor quality0
Sequence length38
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTT88894.041115818952192No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTT49032.2290011092724265No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTT27401.2456583804622576No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTT24111.0960884508374096No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTT10160.4618937644341801No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTT5470.24867705624556746No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4960.22549144405448165No Hit
CAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTT4300.19548653416013528No Hit
GTACATGGGTGGTATCAACGCAGAAAAAAAAAAAAAAA3480.15820770671564438No Hit
GTACATGGGAAGCAGTGGTATCAAAAAAAAAAAAAAAA3440.15638922732810823No Hit
AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTT3380.15366150824680402No Hit
TCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTT2800.12729355712752996No Hit
ATTCCATTCCATTCCATTCCATTCCATTCCATTCCATT2460.11183648233347276No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2300.10456256478332818No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAAA2290.10410794493644414No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)