FastQCFastQC Report
Thu 19 Sep 2024
EGAF00008553871

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008553871
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences510742
Total Bases19.4 Mbp
Sequences flagged as poor quality0
Sequence length38
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTCCATTCCATTCCATTCCATTCCATTCCATTCCATT27810.5445019207349308No Hit
GAATGGAATGGAATGGAATGGAATGGAATGGAATGGAA19630.38434277972048514No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTT13740.26902036644724736No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTT8500.1664245352839594No Hit
TTCCATTCCATTCCATTCCATTCCATTCCATTCCATTC5630.11023178042925783No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)